ZFYVE27

Protein-coding gene in the species Homo sapiens
ZFYVE27
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1X4U

Identifiers
AliasesZFYVE27, PROTRUDIN, SPG33, zinc finger FYVE-type containing 27
External IDsOMIM: 610243; MGI: 1919602; HomoloGene: 16939; GeneCards: ZFYVE27; OMA:ZFYVE27 - orthologs
Gene location (Human)
Chromosome 10 (human)
Chr.Chromosome 10 (human)[1]
Chromosome 10 (human)
Genomic location for ZFYVE27
Genomic location for ZFYVE27
Band10q24.2Start97,737,121 bp[1]
End97,760,907 bp[1]
Gene location (Mouse)
Chromosome 19 (mouse)
Chr.Chromosome 19 (mouse)[2]
Chromosome 19 (mouse)
Genomic location for ZFYVE27
Genomic location for ZFYVE27
Band19|19 C3Start42,152,390 bp[2]
End42,183,029 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • pancreatic ductal cell

  • right hemisphere of cerebellum

  • mucosa of ileum

  • right uterine tube

  • anterior pituitary

  • left ovary

  • mucosa of transverse colon

  • right frontal lobe

  • right ovary

  • tibial nerve
Top expressed in
  • granulocyte

  • neural layer of retina

  • substantia nigra

  • superior frontal gyrus

  • visual cortex

  • primary visual cortex

  • dentate gyrus of hippocampal formation granule cell

  • vestibular membrane of cochlear duct

  • trigeminal ganglion

  • facial motor nucleus
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • protein binding
  • metal ion binding
  • protein self-association
Cellular component
  • cytoplasm
  • integral component of membrane
  • axon
  • endosome
  • recycling endosome membrane
  • growth cone membrane
  • dendrite
  • plasma membrane
  • cell projection
  • endoplasmic reticulum membrane
  • endoplasmic reticulum
  • membrane
  • integral component of endoplasmic reticulum membrane
  • endoplasmic reticulum tubular network
  • nucleoplasm
  • cytosol
Biological process
  • protein localization to plasma membrane
  • neuron projection development
  • neurotrophin TRK receptor signaling pathway
  • vesicle-mediated transport
  • positive regulation of axon extension
  • endoplasmic reticulum tubular network formation
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

118813

319740

Ensembl

ENSG00000155256

ENSMUSG00000018820

UniProt

Q5T4F4

Q3TXX3

RefSeq (mRNA)
NM_001002261
NM_001002262
NM_001174119
NM_001174120
NM_001174121

NM_001174122
NM_144588

NM_001164531
NM_177319

RefSeq (protein)
NP_001002261
NP_001002262
NP_001167590
NP_001167591
NP_001167592

NP_001167593
NP_653189

NP_001158003
NP_796293

Location (UCSC)Chr 10: 97.74 – 97.76 MbChr 19: 42.15 – 42.18 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Zinc finger, FYVE domain containing 27 is a protein that in humans is encoded by the ZFYVE27 gene.[5]

Function

This gene encodes a protein with several Transmembrane domains, a Rab11-binding domain and a lipid-binding FYVE finger domain. The encoded protein appears to promote Neurite formation. A mutation in this gene has been reported to be associated with Hereditary spastic paraplegia, however the Pathogenicity of the mutation, which may simply represent a Polymorphism (biology), is unclear. [provided by RefSeq, Mar 2010].

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000155256 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000018820 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: Zinc finger, FYVE domain containing 27".

Further reading

  • Zhang C, Li D, Ma Y, Yan J, Yang B, Li P, Yu A, Lu C, Ma X (July 2012). "Role of spastin and protrudin in neurite outgrowth". Journal of Cellular Biochemistry. 113 (7): 2296–307. doi:10.1002/jcb.24100. PMID 22573551. S2CID 25893328.
  • Saita S, Shirane M, Natume T, Iemura S, Nakayama KI (May 2009). "Promotion of neurite extension by protrudin requires its interaction with vesicle-associated membrane protein-associated protein". The Journal of Biological Chemistry. 284 (20): 13766–77. doi:10.1074/jbc.M807938200. PMC 2679478. PMID 19289470.
  • Mannan AU, Krawen P, Sauter SM, Boehm J, Chronowska A, Paulus W, Neesen J, Engel W (August 2006). "ZFYVE27 (SPG33), a novel spastin-binding protein, is mutated in hereditary spastic paraplegia". American Journal of Human Genetics. 79 (2): 351–7. doi:10.1086/504927. PMC 1559503. PMID 16826525.
  • Martignoni M, Riano E, Rugarli EI (July 2008). "The role of ZFYVE27/protrudin in hereditary spastic paraplegia". American Journal of Human Genetics. 83 (1): 127–8, author reply 128–30. doi:10.1016/j.ajhg.2008.05.014. PMC 2443834. PMID 18606302.
  • Matsuzaki F, Shirane M, Matsumoto M, Nakayama KI (December 2011). "Protrudin serves as an adaptor molecule that connects KIF5 and its cargoes in vesicular transport during process formation". Molecular Biology of the Cell. 22 (23): 4602–20. doi:10.1091/mbc.E11-01-0068. PMC 3226478. PMID 21976701.
  • Shirane M, Nakayama KI (November 2006). "Protrudin induces neurite formation by directional membrane trafficking". Science. 314 (5800): 818–21. Bibcode:2006Sci...314..818S. doi:10.1126/science.1134027. PMID 17082457. S2CID 1728286.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.


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