Protein found in humans
COL11A1 |
---|
|
Identifiers |
---|
Aliases | COL11A1, collagen, type XI, alpha 1, CO11A1, COLL6, STL2, collagen type XI alpha 1, collagen type XI alpha 1 chain, DFNA37 |
---|
External IDs | OMIM: 120280; MGI: 88446; HomoloGene: 56389; GeneCards: COL11A1; OMA:COL11A1 - orthologs |
---|
Gene location (Human) |
---|
| Chr. | Chromosome 1 (human)[1] |
---|
| Band | 1p21.1 | Start | 102,876,467 bp[1] |
---|
End | 103,108,872 bp[1] |
---|
|
Gene location (Mouse) |
---|
| Chr. | Chromosome 3 (mouse)[2] |
---|
| Band | 3 F3|3 49.35 cM | Start | 113,824,189 bp[2] |
---|
End | 114,014,367 bp[2] |
---|
|
RNA expression pattern |
---|
Bgee | Human | Mouse (ortholog) |
---|
Top expressed in | - tibia
- cartilage tissue
- periodontal fiber
- ventricular zone
- Achilles tendon
- ganglionic eminence
- germinal epithelium
- hair follicle
- optic nerve
- visceral pleura
|
| Top expressed in | - body of femur
- calvaria
- vestibular sensory epithelium
- molar
- human fetus
- tibiofemoral joint
- fossa
- stroma of bone marrow
- condyle
- intercostal muscle
|
| More reference expression data |
|
---|
BioGPS |
| More reference expression data |
|
---|
|
Gene ontology |
---|
Molecular function | - protein-macromolecule adaptor activity
- metal ion binding
- extracellular matrix binding
- extracellular matrix structural constituent
- heparin binding
- heparan sulfate binding
- extracellular matrix structural constituent conferring tensile strength
| Cellular component | - collagen
- endoplasmic reticulum lumen
- collagen type XI trimer
- extracellular matrix
- extracellular region
- collagen-containing extracellular matrix
- extracellular space
| Biological process | - embryonic skeletal system morphogenesis
- endodermal cell differentiation
- ossification
- tendon development
- skeletal system morphogenesis
- chondrocyte development
- heart morphogenesis
- hearing
- detection of mechanical stimulus involved in sensory perception of sound
- ventricular cardiac muscle tissue morphogenesis
- cartilage development
- proteoglycan metabolic process
- inner ear morphogenesis
- cartilage condensation
- visual perception
- extracellular matrix organization
- collagen fibril organization
| Sources:Amigo / QuickGO |
|
Orthologs |
---|
Species | Human | Mouse |
---|
Entrez | | |
---|
Ensembl | | |
---|
UniProt | | |
---|
RefSeq (mRNA) | |
---|
NM_001190709 NM_001854 NM_080629 NM_080630 |
| |
---|
RefSeq (protein) | |
---|
NP_001177638 NP_001845 NP_542196 NP_542197 |
| |
---|
Location (UCSC) | Chr 1: 102.88 – 103.11 Mb | Chr 3: 113.82 – 114.01 Mb |
---|
PubMed search | [3] | [4] |
---|
|
Wikidata |
View/Edit Human | View/Edit Mouse |
|
Collagen alpha-1(XI) chain is a protein that in humans is encoded by the COL11A1 gene.[5][6]
Function
The COL11A1 gene encodes one of the two alpha chains of type XI collagen, a minor fibrillar collagen. Type XI collagen is a heterotrimer but the third alpha chain is a post-translationally modified alpha 1 type II chain. Three transcript variants encoding different isoforms have been identified for this gene.[6]
Clinical significance
Mutations in this gene are associated with type II Stickler syndrome and with Marshall syndrome.[6]
Stickler syndrome, type II is an autosomal dominant condition caused by a mutation in the COL11A1 gene. Features of Stickler syndrome type II include: sensorineural hearing loss, facial features (flat facial profile, anteverted nares, micrognathia), cleft palate, visual disturbances (type 2 vitreous anomaly, childhood-onset myopia, glaucoma, cataracts and retinal detachment), spondyloepiphyseal dysplasia, and arthropathy.
References
- ^ a b c GRCh38: Ensembl release 89: ENSG00000060718 – Ensembl, May 2017
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000027966 – Ensembl, May 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ Bernard M, Yoshioka H, Rodriguez E, Van der Rest M, Kimura T, Ninomiya Y, Olsen BR, Ramirez F (Dec 1988). "Cloning and sequencing of pro-alpha 1 (XI) collagen cDNA demonstrates that type XI belongs to the fibrillar class of collagens and reveals that the expression of the gene is not restricted to cartilagenous tissue". J Biol Chem. 263 (32): 17159–66. doi:10.1016/S0021-9258(18)37512-4. PMID 3182841.
- ^ a b c "Entrez Gene: COL11A1 collagen, type XI, alpha 1".
External links
- GeneReviews/NCBI/NIH/UW entry on Stickler Syndrome
Further reading
- Yoshioka H, Ramirez F (1990). "Pro-alpha 1(XI) collagen. Structure of the amino-terminal propeptide and expression of the gene in tumor cell lines". J. Biol. Chem. 265 (11): 6423–6. doi:10.1016/S0021-9258(19)39343-3. PMID 1690726.
- Hanson IM, Gorman P, Lui VC, et al. (1990). "The human alpha 2(XI) collagen gene (COL11A2) maps to the centromeric border of the major histocompatibility complex on chromosome 6". Genomics. 5 (4): 925–31. doi:10.1016/0888-7543(89)90135-3. PMID 2591970.
- Henry I, Bernheim A, Bernard M, et al. (1989). "Mapping of a human fibrillar collagen gene, pro alpha 1 (XI) (COL11A1), to the p21 region of chromosome 1". Genomics. 3 (1): 87–90. doi:10.1016/0888-7543(88)90165-6. PMID 3220479.
- Keene DR, Oxford JT, Morris NP (1995). "Ultrastructural localization of collagen types II, IX, and XI in the growth plate of human rib and fetal bovine epiphyseal cartilage: type XI collagen is restricted to thin fibrils". J. Histochem. Cytochem. 43 (10): 967–79. doi:10.1177/43.10.7560887. PMID 7560887.
- Zhidkova NI, Justice SK, Mayne R (1995). "Alternative mRNA processing occurs in the variable region of the pro-alpha 1(XI) and pro-alpha 2(XI) collagen chains". J. Biol. Chem. 270 (16): 9486–93. doi:10.1074/jbc.270.16.9486. PMID 7721876.
- Yoshioka H, Greenwel P, Inoguchi K, et al. (1995). "Structural and functional analysis of the promoter of the human alpha 1(XI) collagen gene". J. Biol. Chem. 270 (1): 418–24. doi:10.1074/jbc.270.1.418. PMID 7814404.
- Dharmavaram RM, Baldwin CT, Reginato AM, Jimenez SA (1993). "Amplification of cDNAs for human cartilage-specific types II, IX and XI collagens from chondrocytes and Epstein-Barr virus-transformed lymphocytes". Matrix. 13 (2): 125–33. doi:10.1016/s0934-8832(11)80071-5. PMID 8388073.
- Richards AJ, Yates JR, Williams R, et al. (1997). "A family with Stickler syndrome type 2 has a mutation in the COL11A1 gene resulting in the substitution of glycine 97 by valine in alpha 1 (XI) collagen". Hum. Mol. Genet. 5 (9): 1339–43. doi:10.1093/hmg/5.9.1339. PMID 8872475.
- Shrivastava A, Radziejewski C, Campbell E, et al. (1998). "An orphan receptor tyrosine kinase family whose members serve as nonintegrin collagen receptors". Mol. Cell. 1 (1): 25–34. doi:10.1016/S1097-2765(00)80004-0. PMID 9659900.
- Annunen S, Körkkö J, Czarny M, et al. (2000). "Splicing mutations of 54-bp exons in the COL11A1 gene cause Marshall syndrome, but other mutations cause overlapping Marshall/Stickler phenotypes". Am. J. Hum. Genet. 65 (4): 974–83. doi:10.1086/302585. PMC 1288268. PMID 10486316.
- Fischer H, Salahshor S, Stenling R, et al. (2002). "COL11A1 in FAP polyps and in sporadic colorectal tumors". BMC Cancer. 1: 17. doi:10.1186/1471-2407-1-17. PMC 59693. PMID 11707154.
- Jun AS, Liu SH, Koo EH, et al. (2001). "Microarray analysis of gene expression in human donor corneas". Arch. Ophthalmol. 119 (11): 1629–34. doi:10.1001/archopht.119.11.1629. PMID 11709013.
- Urabe K, Jingushi S, Ikenoue T, et al. (2002). "Immature osteoblastic cells express the pro-alpha2(XI) collagen gene during bone formation in vitro and in vivo". J. Orthop. Res. 19 (6): 1013–20. doi:10.1016/S0736-0266(01)00043-2. PMID 11780999.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Melkoniemi M, Koillinen H, Männikkö M, et al. (2003). "Collagen XI sequence variations in nonsyndromic cleft palate, Robin sequence and micrognathia". Eur. J. Hum. Genet. 11 (3): 265–70. doi:10.1038/sj.ejhg.5200950. PMID 12673280.
- Matsuo N, Yu-Hua W, Sumiyoshi H, et al. (2003). "The transcription factor CCAAT-binding factor CBF/NF-Y regulates the proximal promoter activity in the human alpha 1(XI) collagen gene (COL11A1)". J. Biol. Chem. 278 (35): 32763–70. doi:10.1074/jbc.M305599200. PMID 12805369.
- Poulson AV, Hooymans JM, Richards AJ, et al. (2004). "Clinical features of type 2 Stickler syndrome". J. Med. Genet. 41 (8): e107. doi:10.1136/jmg.2004.018382. PMC 1735871. PMID 15286167.
- Kimura K, Wakamatsu A, Suzuki Y, et al. (2006). "Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes". Genome Res. 16 (1): 55–65. doi:10.1101/gr.4039406. PMC 1356129. PMID 16344560.
- Majava M, Hoornaert KP, Bartholdi D, et al. (2007). "A report on 10 new patients with heterozygous mutations in the COL11A1 gene and a review of genotype-phenotype correlations in type XI collagenopathies". Am. J. Med. Genet. A. 143 (3): 258–64. doi:10.1002/ajmg.a.31586. PMID 17236192. S2CID 43244117.
Extracellular matrix | |
---|
Other | |
---|